I will makeĪn effort to maintain backward compatibility, but there is no guarantee of this, so a backup copy should always be made before updating. The individual user is responsible for updating. Updates for the plugins will be uploaded periodically. :DiameterJ will work with x86 (32-bit) or 圆4. If you get an error that says "[S cannot be cast to [F" or "[B cannot be cast to [F" then you need to convert to 32-bit with Image>Type>32-bit. Follow instructions Here or Here for installation of ImageJ/Fiji on macOS Download and unzip the DiameterJ files (Find in 'File' in the Info box above) Move or copy the three folders into the plugins folder of the directory where you have placed ImageJ. A common problem with my plugins is that most are written for 32-bit images with support added later for 16 and then 8 bit images. Download Fiji for your OS Windows 64-bit: (USA), micron.ox.ac.uk (European mirror) Windows 32-bit: (USA), micron.ox.ac. Note that these plugins are provided on an as is basis with no guarantees or support. Here is an excel worksheet with a list of plugins and a brief description: Plugins_List.xls. If you prefer github, I have a library there as well.Ī zipped documentation folder is here: Docs.zip. The source code can be accessed by opening the above jar files with any zip archive utility (e.g. Abstract: Clonogenic assays measure the survival and growth of a single mammalian cell into a colony. 1 Turku Bioscience, University of Turku, Åbo Akademi University 2 Equal contribution. I used to have the packages Jay_Plugins2.jar and Jay_Plugins3.jar but modern ImageJ supports a larger number of plugins so those plugins have been shifted into the Jay_Plugins package. Camilo Guzmán 1,2, Manish Bagga 1,2, Amanpreet Kaur 1, Jukka Westermarck 1, and Daniel Abankwa 1. ![]() For installation, simply copy this file to your plugins folder. You need to either manually change it to or reinstall a fresh copy of Fiji which should have the correct URL.Īll plugins can be downloaded as a jar file here: Jay_Plugins.jar. Note that due to recent server security updates, the former Fiji update site URL does not work. ![]() This is the recommended installation mechanism as it provides update reminders and will install dependencies. See the fiji help guide to follow the site with your copy of FIJI. ![]() DiameterJ is a validated nanofiber diameter characterization tool. By using this software, you are agreeing to the license agreement. DiameterJ is a free, open source plugin created for ImageJ, ImageJ 2, and Fiji developed at the National Institute of Standards and Technology. Note: please read the License Information file for details about licensing and use.
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